Resumen
El chancro del tallo y la sarna negra de la papa son enfermedades ocasionadas por el hongo Rhizoctonia solani grupo de anastomosis tres (GA-3PT), el cual afecta raíces, tallos y tubérculos de papa y reduce el rendimiento de los cultivos. El objetivo de la presente investigación fue determinar la diversidad genética de R. solani GA-3PT presente en los departamentos colombianos de Antioquia, Boyacá y Cundinamarca. La restricción enzimática de la región ribosomal (RFLP, por sus siglas en inglés) ITS-5.8S permitió la diferenciación e identificación específica de los grupos de anastomosis GA-3PT y GA2-1 y confirmó que el GA-3PT es el principal agente causal y origen etiológico de la enfermedad en Colombia. Mediante amplificación aleatoria de marcadores microsatélites (RAMs), por sus siglas en inglés), se observaron dos agrupamientos dentro de R. solani GA-3PT; el GA-3PT (A) comparte un índice de similitud del 78 % entre sí, en comparación con el GA-3PT (B) que presenta una similitud del 79 % entre sus aislamientos. Los agrupamientos no están relacionados con su origen geográfico, sino con el grupo de anastomosis al que pertenecen. La diversidad genética de Nei [D] de 0,25 confirma una alta diversidad genética para el GA-3PT mediante análisis RAMs, relacionada con un alto potencial evolutivo al interior del grupo GA-3PT en Colombia. Finalmente, el hongo R. solani GA-3PT que se obtuvo en Cundinamarca tiene potencial adaptativo para emerger como patógeno de la papa criolla (Solanum phureja) en Colombia, posiblemente, debido a la semejanza de los patosistemas.
Ajayi-Oyetunde, O. O., & Bradley, C. A. (2017). Identification and Characterization of Rhizoctonia Species Associated with Soybean Seedling Disease. Plant Disease, 101(4), 520-533. https://dx.doi.org/10.1094/pdis-06-16-0810-re
Aliferis, K. A., & Jabaji, S. (2012). FT-ICR/MS and GC-EI/MS metabolomics networking unravels global potato sprout’s responses to Rhizoctonia solani infection. PLoS ONE, 7(8). https://dx.doi.org/10.1371/journal.pone.0042576
Anderson, N. A. (1982). The Genetics and Pathology of Rhizoctonia Solani. Annual Review of Phytopathology, 20, 329-347. https://dx.doi.org/10.1146/annurev.py.20.090182.001553
Anguiz, R., & Martin, C. (1989). Anastomosis groups, pathogenicity, and other characteristics of Rhizoctonia solani isolated from potatoes in Peru. Plant Disease, 73(3), 199-201. https://doi.org/10.1094/pd-73-0199
Balali, G. R., Whisson, D. L., Scott, E. S., & Neate, S. M. (1996). DNA fingerprinting probe specific to isolates of Rhizoctonia solani AG-3. Mycological Research, 100(4), 467-470. https://dx.doi.org/10.1016/S0953-7562(96)80145-6
Horsfall, J. G., & Barratt, R. W. (1945). An improved grading system for measuring plant disease. Phytopathology, 35, 655. http://www.garfield.library.upenn.edu/classics1986/A1986A666500001.pdf
Beltrán, C., Cotes, A. M., & Becerra, A. P. (2007). Selection of isolates of Trichoderma spp. with biocontrol activity over Rhizoctonia solani in potato. IOBC WPRS Bulletin, 30(6/2), 55-58. http://www.iobc-wprs.org/pub/bulletins/iobc-wprs_bulletin_2007_30_06.pdf
Beltrán, C., Velandia, C., & Cotes, A. (2011). Trichoderma koningiopsis Th003, a biological alternative in the control of Rhizoctonia solani in potato cultivars. CORPOICA.
Campion, C., Chatot, C., Perraton, B., & Andrivon, D. (2003). Anastomosis groups, pathogenicity and sensitivity to fungicides of Rhizoctonia solani isolates collected on potato crops in France. European Journal of Plant Pathology, 109(9), 983-992. https://doi.org/10.1023/B:EJPP.0000003829.83671.8f
Carling, D. E., Brainard, K. A., Virgen-Calleros, G., & Olalde-Portugal, V. (1998). First Report of Rhizoctonia solani AG-7 on Potato in Mexico. Plant Disease, 82(1), 127. https://dx.doi.org/10.1094/pdis.1998.82.1.127c
Carling, D. E., Kuninaga, S., & Brainard, K. A. (2002). Hyphal anastomosis reactions, rDNA-internal transcribed spacer sequences, and virulence levels among subsets of Rhizoctonia solani anastomosis group-2 (AG-2) and AG-BI. Phytopathology, 92(1), 43-50. https://dx.doi.org/10.1094/PHYTO.2002.92.1.43
Cedeño, L., Carrero, C., Quintero, K., Araujo, Y., Pino, H., & García, R. (2001). Identificación y virulencia de grupos de anastomosis de Rhizoctonia solani Kühn asociados con papa en Mérida, Venezuela. Interciencia, 26(7), 296-300. https://www.redalyc.org/pdf/339/33905805.pdf
Ceresini, P. C., Shew, H. D., & Cubeta, M. A. (1999). RFLP analysis of the PCR amplified ribosomal DNA regions ITS and IGS indicated that isolates of Rhizoctonia solani from potato and tobacco represent distinct groups within the anastomosis group 3. Phytopathology, 89, S12.
Ceresini, P. C., Shew, H. D., Vilgalys, R. J., & Cubeta, M. A. (2002). Genetic diversity of Rhizoctonia solani AG-3 from potato and tobacco in North Carolina. Mycologia, 94(3), 437-449. https://dx.doi.org/10.1080/15572536.2003.11833209
Ceresini, P. C., Shew, H. D., Vilgalys, R. J., Rosewich, U. L., & Cubeta, M. A. (2002). Genetic structure of populations of Rhizoctonia solani AG-3 on potato in eastern North Carolina. Mycologia, 94(3), 450-460. https://dx.doi.org/10.1080/15572536.2003.11833210
Chavarro-Mesa, E., Ceresini, P. C., Ramos Molina, L. M., Pereira, D. A. S., Schurt, D. A., Vieira, J. R., & McDonald, B. A. (2015). The Urochloa foliar blight and collar rot pathogen Rhizoctonia solani AG-1 IA emerged in South America via a host shift from rice. Phytopathology, 105(11), 1475-1486. https://dx.doi.org/10.1094/phyto-04-15-0093-r
Chavarro-Mesa, E., Ceresini, P., Pereira, D., Vicentini, S., Silva, T., Ramos-Molina, L., Negrisoli, M., Schurt, D., & Vieira Júnior, J. R. (2020). A broad diversity survey of Rhizoctonia species from the Brazilian Amazon reveals the prevalence of R. solani AG-1 IA on signal grass and the new record of AG-1 IF on cowpea and soybeans. Plant Pathology, 69(3), 455-466. https://dx.doi.org/10.1111/ppa.13142
Ciampi, M. B., Meyer, M. C., Costa, M. J. N., Zala, M., McDonald, B. A., & Ceresini, P. C. (2008). Genetic Structure of Populations of Rhizoctonia solani Anastomosis Group-1 IA from Soybean in Brazil. Phytopathology, 98(8), 932-941. https://dx.doi.org/10.1094/phyto-98-8-0932
Cotes, A. M. (Ed.). (2018). Control biológico de fitopatógenos, insectos y ácaros (Vol. 2). Corporación Colombiana de Investigación Agropecuaria (Agrosavia).
Das, S., Shah, F. A., Butler, R. C., Falloon, R. E., Stewart, A., Raikar, S., & Pitman, A. R. (2014). Genetic variability and pathogenicity of Rhizoctonia solani associated with black scurf of potato in New Zealand. Plant Pathology, 63(3), 651-666. https://dx.doi.org/10.1111/ppa.12139
David, G. Q., Chavarro-Mesa, E., Schurt, D. A., & Ceresini, P. C. (2018). Rhizoctonia como fitopatógeno no agroecossistema brasileiro. In U.P. Lopes, & S.J. Michereff (Eds.), Desafios Manejo Doenças Radiculares causadas por fungos (pp. 33-55). https://ainfo.cnptia.embrapa.br/digital/bitstream/item/178987/1/Livro-Desafios-Manejo-Doencas-Radiculares2.pdf
Elbakali, A. M., Lilja, A., Hantula, J., & Martin, M. P. (2003). Identification of Spanish isolates of Rhizoctonia solani from potato by anastomosis grouping, ITS-RFLP and RAMS-fingerprinting. Phytopathologia Mediterranea, 42(2), 167-176. http://digital.csic.es/bitstream/10261/45785/1/2003_MPMartin_Phytopathol.Medit.%2042.pdf
Ferrucho, R. L., Ceresini, P. C., Ramirez-Escobar, U. M., McDonald, B. A., Cubeta, M. A., & García-Domínguez, C. (2013). The population genetic structure of Rhizoctonia solani AG-3PT from potato in the Colombian Andes. Phytopathology, 103(8), 862-869. https://dx.doi.org/10.1094/PHYTO-11-12-0278-R
Ferrucho, R. L., Cifuentes, J. M., Ceresini, P., & García-domínguez, C. (2012). Rhizoctonia solani AG-3PT is the major pathogen associated with potato stem canker and black scurf in Colombia. Agronomía Colombiana, 30(2), 204-2013. http://www.scielo.org.co/scielo.php?pid=S0120-99652012000200007&script=sci_arttext&tlng=en
González-García, V., Portal Onco, M. A., & Rubio Susan, V. (2006). Review. Biology and systematics of the form genus Rhizoctonia. Spanish Journal of Agricultural Research, 4(1), 55-79. https://dx.doi.org/10.5424/sjar/2006041-178
Gonzalez-Vera, A. D., Bernardes-de-Assis, J., Zala, M., McDonald, B. A., Correa-Victoria, F., Graterol-Matute, E. J., & Ceresini, P. C. (2010). Divergence between sympatric rice-and maize-infecting populations of Rhizoctonia solani AG-1 IA from Latin America. Phytopathology, 100(2), 172-182. https://dx.doi.org/10.1094/PHYTO-100-2-0172
Goodwin, D. C., & Lee, S. B. (1993). Microwave miniprep of total genomic DNA from fungi, plants, protists and animals for PCR. BioTechniques, 15(3), 438-444. http://europepmc.org/abstract/MED/8217156
Hammer, Ø., Harper, D., & Ryan, P. (2001). Past: Paleontological statistics software package for education and data analysis. Paleontologia Electronica, 4(1), 1-9. https://palaeo-electronica.org/2001_1/past/past.pdf
Hantula, J., Dusabenyagasani, M., & Hamelin, R. C. (1996). Random amplified microsatellites (RAMS)-a novel method for characterizing genetic variation within fungi. European Journal of Forest Pathology, 26(3), 159-166. https://dx.doi.org/10.1111/j.1439-0329.1996.tb00720.x
Helgason, T., Watson, I. J., & Young, J. P. W. (2003). Phylogeny of the Glomerales and Diversisporales (Fungi: Glomeromycota) from actin and elongation factor 1-alpha sequences. FEMS Microbiology Letters, 229(1), 127-132. https://dx.doi.org/10.1016/S0378-1097(03)00802-4
Herrera, C. A., Fierro, L. H., & Moreno, J. D. (Eds.). (2000). Manejo integrado del cultivo de la papa [Technical manual]. Corporación Colombiana de Investigación Agropecuaria (CORPOICA). https://repository.agrosavia.co/handle/20.500.12324/34707
Hunter, P. R. (1990). Reproducibility and indices of discriminatory power of microbial typing methods. Journal of Clinical Microbiology, 28(9), 1903-1905. https://doi.org/10.1128/jcm.28.9.1903-1905.1990
Hunter, P. R., & Gaston, M. A. (1988). Numerical index of the discriminatory ability of typing systems: An application of Simpson’s index of diversity. Journal of Clinical Microbiology, 26(11), 2465-2466. http://jcm.asm.org/content/26/11/2465.abstract
Inokuti, E. M., Reis, A., Ceresini, P. C., Câmara, M. P. S., & Michereff, S. J. (2019). Diversity and pathogenicity of anastomosis groups of Rhizoctonia associated with potato stem canker and black scurf diseases in Brazil. European Journal of Plant Pathology, 153(4), 1333–1339. https://dx.doi.org/10.1007/s10658-018-01627-5
Jia, Y., Correa-Victoria, F., McClung, A., Zhu, L., Liu, G., Wamishe, Y., & Correll, J. C. (2007). Rapid determination of rice cultivar responses to the sheath blight pathogen Rhizoctonia solani using a micro-chamber screening method. Plant Disease, 91(5), 485-489. https://dx.doi.org/10.1094/pdis-91-5-0485
Justesen, A. F., Yohalem, D., Bay, A., & Nicolaisen, M. (2003). Genetic diversity in potato field populations of Thanatephorus cucumeris AG-3, revealed by ITS polymorphism and RAPD markers. Mycological Research, 107(11), 1323-1331. https://dx.doi.org/10.1017/S0953756203008517
Kuninaga, S., Carling, D. E., Takenuichi, T., & Yokosawa, R. (2000). Comparison of rDNA-ITS Sequences between Potato and Tobacco Strains in Rhizoctonia solani AG-3. Journal of General Plant Pathology, 66(1), 2-11. https://dx.doi.org/10.1007/PL00012917
Kuninaga, S., Godoy-Lutz, G., & Yokosawa, R. (2002). rDNA-ITS nucleotide sequences analysis of Thanatephorus cucumeris AG-1 associated with web blight on common beans in Central America and Caribbean. Japanese Journal of Phytopathology, 68, 3-20.
Lees, A. K., Cullen, D. W., Sullivan, L., & Nicolson, M. J. (2002). Development of conventional and quantitative real-time PCR assays for the detection and identification of Rhizoctonia solani AG-3 in potato and soil. Plant Pathology, 51(3), 293-302. https://dx.doi.org/10.1046/j.1365-3059.2002.00712.x
Mandujano, M. C., Montaña, C., Franco, M., Golubov, J., & Flores-Martínez, A. (2001). Integration of demographic annual variability in a clonal desert cactus. Ecology, 82(2), 344-359. https://dx.doi.org/10.1890/0012-9658(2001)082[0344:IODAVI]2.0.CO;2
Mandujano, M. del C., Montaña, C., Méndez, I., & Golubov, J. (1998). The relative contributions of sexual reproduction and clonal propagation in Opuntia rastrera from two habitats in the Chihuahuan Desert. Journal of Ecology, 86(6), 911-921. https://dx.doi.org/10.1046/j.1365-2745.1998.00308.x
McDonald, B. A. (1997). The population genetics of fungi: tools and techniques. Phytopathology, 87(4), 448-453. https://dx.doi.org/10.1094/PHYTO.1997.87.4.448
McDonald, B. A., & Linde, C. (2002). Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology, 40(1), 349-379. https://dx.doi.org/10.1146/annurev.phyto.40.120501.101443
Mogie, M., & Hutchings, M. (1990). Phylogeny, ontogeny and clonal growth in vascular plants. In J. van Groenendael & H. de Kroon (Eds.), Clonal Growth in Plants: Regulation and Function (pp. 3-22). SPB Academic Publishing.
Muzhinji, N., Truter, M., Woodhall, J. W., & Van der Waals, J. E. (2015). Anastomosis groups and pathogenicity of Rhizoctonia solani and binucleate Rhizoctonia from potato in South Africa. Plant Disease, 99(12), 1790-1802. https://dx.doi.org/10.1094/PDIS-02-15-0236-RE
Muzhinji, N., Woodhall, J. W., Truter, M., & Van der Waals, J. E. (2017). Relative contribution of seed tuber- and soilborne inoculum to potato disease development and changes in the population genetic structure of Rhizoctonia solani AG 3-PT under Field Conditions in South Africa. Plant Disease, 102(1), 60-66. https://dx.doi.org/10.1094/pdis-03-17-0329-re
Nei, M. (1973). Analysis of Gene Diversity in Subdivided Populations. Proceedings of the National Academy of Sciences, 70(12), 3321-3323. https://doi.org/10.1073/pnas.70.12.3321
Ogoshi, A. (1987). Ecology and Pathogenicity of Anastomosis and Intraspecific Groups of Rhizoctonia Solani Kuhn. Annual Review of Phytopathology, 25(1), 125-143. https://dx.doi.org/10.1146/annurev.py.25.090187.001013
Pereira, D. A., Ceresini, P. C., Castroagudín, V. L., Ramos-Molina, L. M., Chavarro-Mesa, E., Negrisoli, M. M., & Takada, H. M. (2016). Population genetic structure of Rhizoctonia oryzae-sativae from rice in Latin America and its adaptive potential to emerge as a pathogen on Urochloa pastures. Phytopathology, 107(1), 121-131. https://dx.doi.org/10.1094/phyto-05-16-0219-r
Pérez, T., Albornoz, J., & Dominguez, A. (1998). An evaluation of RAPD fragment reproducibility and nature. Molecular Ecology, 7(10), 1347-1357. https://dx.doi.org/10.1046/j.1365-294x.1998.00484.x
Poloni, N. M., Molina, L. M. R., Mesa, E. C., Garcia, I. L., & Ceresini, P. C. (2016). Evidência de que o fungo Rhizoctonia solani AG-1 IA adaptado à Urochloa na Colômbia mantém ampla gama de hospedeiros incluindo o milho. Summa Phytopathologica, 42(3), 228-232. https://dx.doi.org/10.1590/0100-5405/2176
R Core Team. (2017). R: A language and environment for statistical computing [software]. R Foundation for Statistical Computing. https://www.r-project.org/
Ramanatha, V., & Hodgkin, T. (2002). Genetic diversity and conservation and utilization of plant genetic resources. Plant Cell, Tissue and Organ Culture, 68(1), 1-19. https://dx.doi.org/10.1023/A:1013359015812
Ramos-Molina, L. M., Chavarro-Mesa, E., Pereira, D. A. dos S., Silva-Herrera, M. del R., & Ceresini, P. C. (2016). Rhizoctonia solani AG-1 IA infects both rice and signalgrass in the Colombian Llanos. Pesquisa Agropecuária Tropical, 46(1), 65-71. https://dx.doi.org/10.1590/1983-40632016v4638696
Rioux, R., Manmathan, H., Singh, P., De Los Reyes, B., Jia, Y., & Tavantzis, S. (2011). Comparative analysis of putative pathogenesis-related gene expression in two Rhizoctonia solani pathosystems. Current Genetics, 57(6), 391-408. https://dx.doi.org/10.1007/s00294-011-0353-3
Roberts, P. (2000). Rhizoctonia-Forming Fungi, a Taxonomic Guide. Kew Bulletin, 55(1), 252-253. https://dx.doi.org/10.2307/4117793
Salazar-Zuluaga, L. (2014). Creation of descriptive diagrams for the severity of “take-all” disease by Gaeumannomyces graminis Sacc. Von Arx & d. Oliver var. graminis in leaves and stalks through different phenological stages of rice. [Master’s thesis, Universidad Nacional de Colombia]. Repositorio UN. https://repositorio.unal.edu.co/handle/unal/75277
Sharon, M., Kuninaga, S., Hyakumachi, M., & Sneh, B. (2006). The advancing identification and classification of Rhizoctonia spp. using molecular and biotechnological methods compared with the classical anastomosis grouping. Mycoscience, 47(6), 299-316. https://dx.doi.org/10.1007/s10267-006-0320-x
Suzuki, R., & Shimodaira, H. (2006). Pvclust: An R package for assessing the uncertainty in hierarchical clustering. Bioinformatics, 22(12), 1540-1542. https://dx.doi.org/10.1093/bioinformatics/btl117
Tsror, L. (2010). Biology, epidemiology and management of Rhizoctonia solani on potato. Journal of Phytopathology, 158(10), 649-658. https://dx.doi.org/10.1111/j.1439-0434.2010.01671.x
Willi, Y., Frank, A., Heinzelmann, R., Kälin, A., Spalinger, L., & Ceresini, P. C. (2011). The adaptive potential of a plant pathogenic fungus, Rhizoctonia solani AG-3, under heat and fungicide stress. Genetica, 139(7), 903-908. https://dx.doi.org/10.1007/s10709-011-9594-9
Woodhall, J. W., Adams, I. P., Peters, J. C., Harper, G., & Boonham, N. (2013). A new quantitative real-time PCR assay for Rhizoctonia solani AG3-PT and the detection of AGs of Rhizoctonia solani associated with potato in soil and tuber samples in Great Britain. European Journal of Plant Pathology, 136(2), 273-280. https://dx.doi.org/10.1007/s10658-012-0161-8
Yang, S., Min, F., Wang, W., Wei, Q., Guo, M., Gao, Y., Lu, D. (2017). Anastomosis group and pathogenicity of Rhizoctonia solani associated with stem scanker and black scurf of potato in Heilongjiang Province of China. American Journal of Potato Research, 94(2), 95-104. https://dx.doi.org/10.1007/s12230-016-9535-3
Yang, Y., Zhao, C., Guo, Z., & Wu, X. (2015). Anastomosis group and pathogenicity of Rhizoctonia solani associated with stem canker and black scurf of potato in China. European Journal of Plant Pathology, 143(1), 99-11. https://dx.doi.org/10.1007/s10658-015-0668-x